Presentations and Authors


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Keynote Speeches

The Roots of Systems Biology and Complex Recurrent Interactions: from Henri Poincare to Robert Rosen Abstract Untitled
Ali Karami, Payam Gifani
Evaluation of Clustering Algorithms in Protein Interaction Network Abstract XML
Mahnaz Habibi, Limsoon Wong, Changiz Eslahchi

Full Papers (Presented as Oral)

Fractal Analysis of DNA by Nonlinear Genome Signal Processing for Exon and Intron Separation Abstract
P. Gifani, Ali Karami
A proposed model for mechanism of exon skipping in human and mouse transcripts Abstract
vahid Aslanzadeh, Mehdi Sadeghi, Fatemeh Zare-Mirakabad, Ali Haghnazari, Maysam Hafezparast
Position dependencies in human and mouse cassette exons and retained introns splice sites Abstract
Vahid Aslanzadeh, Mehdi Sadeghi, Ali Haghnazari, Fatemeh Zare-Mirakabad, Mostafa Gaderian
Prediction of Protein Stability Changes by Data Mining and Support Vector Machine Abstract XML
Saeed Bigdeli, Armin Madadkar-Sobhani, Behruz Minaei
A New Algorithm for computing Sequences Similarity Abstract
mohammad engareh, mohammad ebrahim shiri, sabereh ghaeminejad, hamidreza mohajerani
a new scoring funcion for discrimination of native structures from decoys Abstract
mehdi mirzaie, mehdi sadeghi, changiz eslahchi, hamid pezeshk
Motif Finding in Biological Sequences Using Neural Networks Abstract
Negin Najafi, Fatemeh Zare-Mirakabad, Hayedeh Ahrabian, Abbas Nowzari-Dalini
SA-PSOMF: An improved PSO-based algorithm for pattern discovery with simulated annealing Abstract
Fatemeh Zare-Mirakabad, Abbas Nowzari-Dalini, Hayedeh Ahrabian, Somayeh Hashemifar
A Novel Evolutionary algorithm based method for Efficient Quantitative Trait Loci Mapping Abstract
Ahmadreza Ghaffarizadeh, Mahdi Eftekhari, Ali Esmailizadeh
Enumerating the number of RNA structures Abstract
Mohammad Ganjtabesh

Oral Presentations

Modeling and implementing an agent-based system for prediction of protein relative solvent accessibility Abstract
alireza meshkin
Predicting Protein-Protein Interactions using the Mirror Tree Abstract
Reyhaneh Esmaielbeiki, Mahsa Imaniaraghinezhad, Jean-Christophe Nebel
Determining the characters of thermostable xylanase enzyme Abstract
esmaeil ebrahimie, Mansour EBRAHIMI, Parisa Aghagolzadeh
Modeling and stability analysis of interconnected regulatory cycles Abstract
Mahsa Behzadi
MCQ-net : An Algorithm for Constructing Phylogenetic Networks Abstract
Reza Hassanzadeh, Ehsan Mottaghi, Changiz Eslahchi, Mahnaz Habibi
Prediction of relative solvent accessibility with Support Vector Regression based on qualitative and quantitative features selection Abstract
alireza meshkin
Modeling the effect of external electric field on the structure and function of FoF1-ATPase nano-biomolecular motors via molecular dynamics method Abstract
yaser merrikhi
Racial classification using cephalic size and support vector machines Abstract
mehdi esmaeilzadeh
Rational Site Selection for Cysteine Specific PEGylation using Bioinformatics: Erythropoietin as a case study Abstract XML
Reza Ahangari Cohan, Armin Madadkar-Sobhani, Dariush Norouzian, Hossein Khanahmad, Farzin Roohvand, Mohammad Reza Aghasadeghi, Zarrin Minuchehr
Creating an exact model of 3D protein strucutre for in silico site directed mutation Abstract XML
Mohammad Taghizadeh, Zarrin Minuchehr, Armin Madadkar-Sobhani, Bahram Goliaei
ARE THERE ANY DIFFERENCES BETWEEN FEATURES OF PROTEINS EXPRESSED IN MALIGNANT AND BENIGN BREAST CANCERS? Abstract
Narges Shamabadi, Mansour Ebrahimi, esmaeil ebrahimie
Comparison of Different Softwares for Haplotype Inference Based on Number of Genotype required for a Specific Accuracy Abstract
Mohammad Hossein Ferdosi, Ali Esmailizadeh, Mehdi Sadeghi, Ali Katanforoush
Assessing results of clustering gene expression data via Margin Trees method Abstract
Mohammad Taghi Shakeri, Ehsan Sabaghian
Combinatorial Enumeration of RNA Structures Abstract
Nasrin Kahkeshani, Gholam Hasan Shirdel
Finding motif in DNA sequences using hidden markov model Abstract
Shahrzad Shaterzadeh-Oskuei, Abbas Nowzari-Dalini, Hayedeh Ahrabian, Fatemeh Zare-Mirakabad
Bioinformatics Analysis of Plastid Genomes in Order to Efficient Gene Targeting to Plastomes Abstract
Motahhareh Mohsenpour, NadAli Babaeian Jelodar, Masoud Tohidfar
Overlap Divide and Conquer: A new Method for Haplotype Inference with Maximum Parsimony Abstract
mohsen taheri
Are there any differences between feed-forward and recurrent neural networks in predicting thermostable protein tempreature? Abstract
Amir Lakizadeh, Mansour Ebrahimi, esmaeil ebrahimie
Bioinformatics Study of Phenylacetaldehyde Synthase (PAAS), a Protein involved in flower scent production, in Rosa hybrida and Petunia hybrida Abstract Untitled
AKBAR KARAMI, Elham Ashrafi, Esmaeil Ebrahimie
Which features are responsible for halolysin proteins halostability? Abstract
Narges rahpayma, esmaeil ebrahimie, Mansour Ebrahimi
Application of bioinformatics tools in protein engineering; presenting a few applications employed in our labs Abstract
Mansour Ebrahimi, esmaeil ebrahimie
Propagation of Information in the Genetic Networks Abstract
Farinaz Roshani
Selection of appropriate scoring matrix for finding templates in homology modeling Abstract Untitled
Amir Rahimi, Ghasem Mahdevar, Zarrin Minuchehr, Armin Madadkar-Sobhani

Posters

APOBEC1 3D Structure Modeling By PDBViewer Abstract
motahareh arjomandnezhad
Dynein Heavy Chain Abstract
samira kheitan
Structure-Based New Antifungal Compounds Discovery Abstract
marzieh ferdosiyan, soroush Sardari
Boolean Modeling of T Helper Cell Gene Regulatory Network Abstract
S. Yahya Vaezpour, Mehdi Dehghan
The Utility of Chloroplast Matk Gene as Plant DNA Barcode for Phylogenetic Analysis in Zingiberaceae Family Abstract
Ehsan Valiellahi, Amin Mirshamsi, Hamid reza Kavousi, Mohammad Farsi
Molecular study in breeding plans of Iranian native Golpaygani cattle by stochastic simulation Abstract
sonia zakizadeh
Bioinformatics studies to identify a putative region for Promoter of mouse PEP? ? Abstract
tahereh seifi, kamran ghaedi, Mohammad hossein Nasr-Esfahani, somayeh tanhaei, zohre hojati
Use of Universal Primers to Targeting of 16S rRNA Gene for Identification of Gram-Positive Bacteria in Environmental Samples Abstract
Ailar Sabbaghi, Sarah Najafi
The use of DNA barcoding for identification and classification of cyst forming nematodes Abstract
Mohammad hadi Amid motlagh, Ehsan Valiellahi
Molecular Characterization and Functional Analyses of a Novel Cold Stress-Regulated and Chloroplast-Targeted Protein from Cereals Abstract
Ehsan Valiellahi, Mohammad Farsi, Ali Niazi
R package a powerful tool for bioinformatics and its role of in Statistical analysis of phylogenetic tree Abstract
Adham Fani Maleki, Balal Sadeghi, Kobra Ahmadpour
Analyzing ChIP-seq Data Abstract
Ali Mohammadian Mosamam, Constanze Bonifer, David Westhead
Application of GenAlEx and TFPGA Softwares for Identifying Fall and Spring Migrating Caspian Salmon (Salmo trutta caspius Kessler, 1877) by Using AFLP molecular marker Abstract
Ensieh Habibi
A novel view of nano-molecular modeling study of the synchronize interaction between Tamoxifen and Aspirin with Human serum albumin Abstract
sanaz pourgonabadi
Comparison of the iturinA operon in Bacillus species Abstract
Farhang Aliakbari, Meisam Moradi, Seyedeh Felour Mazhar, Parvin Shariati, Sadegh Azimzadeh Jamalkandi
Pathogenicity Analysis for G9055A Mutation in Mitochondrial ATPase 6 Gene in Iranian Patients with Familial Brugada Syndrome Abstract
mehri khatami, mohammad mehdi heidari
Differences of ftsA gene sequence of two different intracellular bacteria : Wolbachia and Neorickettsia Abstract
masoumeh baradaran, masoumeh baradaran
Haplotype Inference with Greedy Parsimonious Tree Grow Method Abstract
mohsen taheri
Barcoding of Life : a Tool for Insect Identification Abstract
Javad Karimi, Mahnaz Hassani
Optimization of primer designing for TAIL-PCR based promoter isolation Abstract
Asghar Ebrahimi, Nasser Mahna
In Silico Elucidation of Iron Acquisition Genetics in Rosaceaous Fruit Trees Abstract
Nasser Mahna, Asghar Ebrahimi
Bioinformatics comparison of hemagglutinin in different genotypes of measles virus Abstract
Hassan Mohabatkar, Malihe Mahjoub, Sasan Mohsenzadeh
structureal and kinetic studies of native 5-enolpyrovil shikimate -3-phosphate synthase with mutant and CP4 EPSPS in order to obtain Glyphosate tolerance Abstract
mahlegha ghavami
Analysis of Synonymous Codon Usage Bias and base and amino acid composition in 13 species of Flaviviridae Abstract
Hassan Mohabatkar, Fatemeh Moosawi, Sasan Mohsenzadeh
The Comparison Results of Two Secondary Protein structure Prediction Methods on Mitochondrial A458T Missense Mutation in ND5 Protein Abstract
Mohammad Mehdi Heidari, Mehri Khatami
Phylogenic Investigation of Plants Based on Alignment of p5CS Gene Product Sequences Abstract
saeid sheikhehpour, Danial Kahrizi
Phylogenic Study and Alignment of p5CS Gene Product in Poaceae Species Abstract
saeid sheikhehpour, Danial Kahrizi
Application of QTL databases in agriculture biotechnology and molecular plant breeding with emphasis on rice (Oryza sativa L.) Abstract
Atefeh Sabouri, Hossein Sabouri, Ahmad Reza Dadras
Bioinformatics approach for designation of the most appropriated shRNA to knock ?down Peroxisomal Protein gene Abstract
motahare hahsemi, Kamran Ghaedi‎, Mojtaba emadi, Mohammad ‎ hossein Nasr Esfahani‎
survey of data mining algorithms in the Protein-protein interactions analysis Abstract
hamid ravaee
Bioinformatics studies for Determination of transcription factor binding sites in promoters of mouse PPAR? isoforms Abstract
Liana Lachinani, Kamran Ghaedi, Mohammad Hossein Nasr-Esfahani, Somayeh Tanhaei, Parichehreh Yaghmaei
Microsatellite profiling technique and assignment programs serve to detect parentage in Caspian salmon (Salmo trutta caspius) Abstract
Iman Sourinejad, Mohammad R. Kalbassi, Manuel Vera, Paulino Martínez
Comparison of root genes expression profiling of wheat under drought stress by expressed sequence tags (EST) analysis Abstract
Rudabe Ravash, Behrous Shiran, Esmaeil Ebrahimie, Roohollah Shamloo Dashtpagerdi
Phylogenetic analysis of Enterobacteriaceae family based on the nucleotide sequences of rpsL gene Abstract
alireza dehghani, Maryam Daneshpour
A parameterized algorithm for haplotype block partitioning based on perfect phylogeny Abstract
Narjess Afzaly
The study on conserved regions of Pyrroline-5-carboxylate reductase gene (p5CR) in the important plant species Abstract
Mohammad Javad Motamedi, Alireza Zebarjadi, Danial Kahrizi
Multiple alignments analysis and structure prediction of barley dwarf virus Rep protein Abstract
Mohammad hadi Amid motlagh
Comparison of Conserve 16s ribosomal RNA Sequence for Designing Universal Primer to Detect Obligate Anaerobic Bacteria Abstract
Maryam khorasani, Jalil Fallah Mehrabadi
The use of bioinformatics in DNA fingerprinting of pistachio cultivars Abstract
ayda taghizadenaser
Analysis of Alternative Splicing Mediated by the PASA Software Abstract
Ehsan Valiellahi, Hamid reza Kavousi, Amin Mirshamsi, Mohammad Farsi, Mohsen Valiellahi
Application of Bioinformatics in Genetic Comparison of Caspian salmon (Salmo trutta caspius) immigrant forms Abstract
Seyedeh Ainaz Shirangi, Mohammad Reza Kalbassi,
Missing Value Imputation in DNA Microarrays Based on Conjugate Garadient Method Abstract
Fatemeh Dorri, Paeiz Azmi
Alzheimer Related Genes Identification Using Supervised Independent Component Analysis Abstract
Faezeh Dorri, Elahe Elahi, Seyed Hassan Paylakhi
Microarray Data Analysis for Detection and classification of Viral infection Abstract
K. Nazari, Ali Karami, N. Mahdavi Amiri
Study of Evolution Phylogeny of Sturgeon Fishes by using of Beluga (Huso huso) as Model Abstract
ahmad gharaei
Bioinformatics analysis for study of PPAR gamma gene expression during neurogenesis Abstract
khadijeh shabani
Designing a Set of Universal Primers for Detection of ?-Lactamase Super Family Abstract
Ailar Sabbaghi, Jalil Fallah Mehrabadi, Hedroosha Molla agha Mirzaei, Mohammad mehdi Soltan Dallal
Evaluation a Set of Universal Primers for Molecular Detection of TEM and AmpC (Dha and Mox)-type ?-Lactamase in Clinical Isolates of Escherichia coli Abstract
Hedroosha Molla agha Mirzaei, Ailar Sabbaghi, Jalil Fallah Mehrabadi, Mohammad mehdi Soltan Dallal
A molecular modeling study of interaction between amlodipine and human serum albumin based on Lamarckian genetic algorithm by adopting three different grid box sizes Abstract
nooshin abdollahpour, Mohammad Reza Saberi, Jamshid khan chamani, Ahmad Asoode
Codon optimization of cry6 in order to increase its expression level in potato with using bioinformatics analysis Abstract
Raha Abedini, Masoud Tohidfar, Motahhareh Mohsenpour
The study of 3D- structure of sumo4 based on homology modeling Abstract
Fahimeh Erfanitabar, Elaheh sadat Hosseini, Mahbubeh Zarrabi
A Bioinformatics study on Glutathione S-transferases in human Abstract
Fatemeh Zamansani, Esmaeil Ebrahimie, Ali Mohammad tale, Mansour Ebrahimie
Codon optimization of mtld in order to increase its expression level in Brassica napus L. with using bioinformatics analysis Abstract
roya motallebi Chaleshtori, Baratali Siyahsar, hassan kachal rahnama, taha roodbar shojaei
The arsR gene: A comparative phylogenetic and bioinformatic analysis to study reasons for different sensitivity to arsenic compounds Abstract
Maryam Daneshpour, Massoud Saidijam
Bioinformatic Study of ?12-Desaturase Gene in Six Plant Species Abstract
zahra mohamadi
The nano-molecular modeling of the interaction between Ropinirole hydrochloride and human holo-transferrin based on Lamarckian genetic algorithm Abstract
mona kabiri
A novel view of the interaction between Tamoxifen and Human holo transferrin modeled: A molecular modeling approach Abstract
Sareh Sarzehi
Molecular modeling investigation of the interaction between amlodipine and human serum albumin Abstract
parvin atarodi shahri
A New Algorithm for Protein pattern search Abstract
mohammad engareh, mohammad ebrahim shiri, sabereh ghaeminejad, hamidreza mohajerani
Molecular epidemiology application to a mycobacterium tuberculosis transmission by Abstract
mehdi jafarian
Sarcin/ricin rRNA motif detection in PDF files 3G4S, 3G6E, and 3CXC using FR3D program Abstract
Behnaz Toluinia, Samaneh Sepahi, Razieh Jalal
Molecular modeling studies on cholesterol esterase inhibitors: proposition of new ligands , and insight into possible additional effects Abstract
Azadeh Ebrahim-Habibi, Babak Mohammadi, Vahid Haghpanah, Bagher Larijani
Tertiary structure (3D) prediction of extracellular domains of Ror1 Abstract
Parisa Shahnazari, Mahmood Jedi-Tehrani, Hodjattallah Rabbani
Modeling of mutation in phenylalanine hydroxylase S231F using computational methods Abstract XML
Rose Afzalifar, Armin Madadkar-Sobhani, Massoud Mahmoudian
Modeling three dimensional structure of WW domain of WWOX using homology and molecular dynamics simulation Abstract XML
Mostafa Jamshidiha, Armin Madadkar-Sobhani, Mohammad Hossein Ghahremani
TITAN: Protein secondary structure assignment by emphasis on tight turns Abstract XML
Rose Afzalifar, Armin Madadkar-Sobhani, Zarrin Minuchehr, Bahram Goliaei
Absents of an automatic software for calculating HGDI index for calculating score of clustering in Mycobacterium tuberculosis epidemiology studies Abstract
Mohammad Asgharzadeh, Hossein Samadi Kafil
Design of GMP software for analysis of genome and amino acid sequences Abstract XML
babak babaabasi
An Online-Random Algorithm for Motif Finding Problem in Biological Networks Abstract
Moslem Masoodi, Mohammad Reza Razzazi
Designing and Blasting primers for amplification and separation of particular section of genome Abstract
somayeh heidari, zohre hojati
An Engineered Peptide for Sticky Hands of HIV Viruse Abstract
hojat borna
Neutrality test of two PAH-BglII and PAH-EcoRI polymorphisms at Isfahan population Abstract
zahra fazeli, sadeq vallian
Microsatellite diversity and population genetic structure of Rutilus frisii kutum in Mazandaran coasts Abstract
Mohammad Rezaei
Motif Search in DNA Sequences Using Fuzzy Logic Abstract
Sara Mohammadi-Achajeloii, Hayedeh Ahrabian, Fatemeh ZAre-Mirakabad, Abbas Nowzari-Dalini
Prediction of Three-dimensional (3D) structure and function ATAXIN-2 protein in rice Abstract
shadi heidari, esmail ebrahimi, peivand heidari, mohammad taghi assad
In silico expression analysis of a protein phosphatase 2C subfamily in rice Abstract
parisa par aghagolzade, Esmaeil Ebrahimie, Zahra-Sadat Shobbar, Rafieh kashfi
Probing the binding cavity of lomefloxacin on HSA based on its comparative docking with ciprofloxacin Abstract
Hanif Vahedian Movahed, Mohammad Reza Saberi, Jamshid Chamani
Phylogenetic and functional analysis of Zn/Cd/Pb-ATPase pump using bioinformatics Abstract
elham ashrafi, abbas alemzadeh, Esmaeil Ebrahimie
Bioinformatics analysis for design and construction of a plant/bacteria hybrid sigma factor, in order to specific gene expression in the plant Plastids Abstract
Motahhareh Mohsenpour, Masoud Tohidfar, NadAli Babaeian Jelodar
Homology Modeling Of Functional Domain Of PyocinS2 From The Crystal Structure Of ColicinE7 And Studying Of PyocinS2-Immunity Protein Interactions Abstract
razieh dalirfardooi, Zahra Tavajohii, Mahbubeh Zarrabi
Modeling the structure of a carrier protein: human diferric transferrin Abstract
Hanif Vahedian Movahed, Mohammad Reza Saberi, Jamshid Chamani
Microarray Data Analysis of Two Transcription Factors "ERF4" and "TFIIB" in Soybean (Glycine max) somatic embryogenesis Abstract
Rafieh Kashfi, Esmaeil Ebrahimie, Zahra Poorkhorshid
A report about choosing the appropriate gene source for cloning based on bioinformatics studies Abstract
Zahra Rikhtegaran Tehrani, Maryam Daneshpour, Masoud Saeedi Jam
A study on different analysis methods of real-time PCR data Abstract
Ahamad Tahmasebi, Mansour Ebrahimi, esmaeil ebrahimie, Manijeh Mohammadi-dehcheshmeh
Positive selection in molecular evolution of the HSP70 gene family Abstract
javad ahmadpanah, misagh moridi, aliakbar masoudi, rasoul vaez torshizi
Phylogenetic study on 6 plants species based on chitinase gene alignment Abstract
leila obeidi, danial kahrizi
Prediction of three-dimensional structure of flagellin from E. coli Abstract XML
Hamzeh Rahimi, Behrouz Kashef, Armin Madadkar-Sobhani
The suitable binding sites finding of the interaction between human serum albumin and fluoxymestrone as a model of drug binding protein Abstract
maryam sabaghian
Introducing 1-methyl malate as a new and potent inhibitor of class A ?-lactamase by computational studies Abstract
sako mirzaie, ahmad reza shahverdi
Modeling the Epithelial-Mesenchymal Transition and its Effect on Tumor Invasiveness and Metastasis Abstract
Maryam Rouhani
Computational simulation of gramicidin like channel as a peptide nanotube Abstract
Ayat Saeedi, Anahita Kyani, Armin Madadkar-Sobhani, Bahram Goliaei
PREDICTION OF RELATIVE SOLVENT ACCESSIBILITY USING PACE REGRESSION Abstract
alireza meshkin
Alternative splicing and plant functions Abstract
Vahid Aslanzadeh, Ali Haghnazari
Evaluation of saCOL2291 and saCOL2581 genes polymorphisms, new candidate genes for preparation of S.aureus vaccine Abstract
Hamide Rohani nejad, Mohammad Reza Pourmand, Jalil Fallah Mehraabadi, Mohammad Reza Zolfaghari
Bioinformatic investigation of short tandem repeat loci D6S2879 and D6S2880 associated with HLA-DRB1 Abstract
Maryam Sheikholeslam, sadeq vallian
Identification of functional primers for M2_3_22 STR marker next to the HLA-DRB1 Abstract
Maryam Sheikholeslam, sadeq vallian
Bioinformatics analysis of sequence tag sites (STSs) in SMA locus Abstract
Maryam Sedghi, Sadeq Vallian
Potential of MS Excel in Developing Bioinformatics Softwares Abstract
Mostafa Ghaderi
Structural studies of therapeutic monoclonal antibodies using IMGT/3D structure; tools and database Abstract
Soudabeh Akbarzadeh Sharbaf, Sirous Zeinali, Zarrin Minuchehr, Mohammad Ali Shokrgozar, Bagher Yakhchali
Analysis of Codon Usage Bias of Kinase Genes for Different Species Abstract
Fereshteh Chitsazian, Mehdi Ahmadi, Ali Masoudi-Nejad
Sequencing and comparison of the nuclear ribosomal internal transcribed spacer region for Iranian black caraway populations Abstract
Mostafa Azimzadeh, Reza Amiri, Mohammad Hassan Assareh, Massih Forootan, Mohammad Reza Bihamta
Homology modeling and docking studies of Thyroid-Stimulating Hormone (TSH) Abstract
Habib Eslami, Hamzeh Rahimi, Armin Madadkar-Sobhani